|
LSST Applications g00d0e8bbd7+8c5ae1fdc5,g013ef56533+603670b062,g083dd6704c+2e189452a7,g199a45376c+0ba108daf9,g1c5cce2383+bc9f6103a4,g1fd858c14a+cd69ed4fc1,g210f2d0738+c4742f2e9e,g262e1987ae+612fa42d85,g29ae962dfc+83d129e820,g2cef7863aa+aef1011c0b,g35bb328faa+8c5ae1fdc5,g3fd5ace14f+5eaa884f2a,g47891489e3+e32160a944,g53246c7159+8c5ae1fdc5,g5b326b94bb+dcc56af22d,g64539dfbff+c4742f2e9e,g67b6fd64d1+e32160a944,g74acd417e5+c122e1277d,g786e29fd12+668abc6043,g87389fa792+8856018cbb,g88cb488625+47d24e4084,g89139ef638+e32160a944,g8d7436a09f+d14b4ff40a,g8ea07a8fe4+b212507b11,g90f42f885a+e1755607f3,g97be763408+34be90ab8c,g98df359435+ec1fa61bf1,ga2180abaac+8c5ae1fdc5,ga9e74d7ce9+43ac651df0,gbf99507273+8c5ae1fdc5,gc2a301910b+c4742f2e9e,gca7fc764a6+e32160a944,gd7ef33dd92+e32160a944,gdab6d2f7ff+c122e1277d,gdb1e2cdc75+1b18322db8,ge410e46f29+e32160a944,ge41e95a9f2+c4742f2e9e,geaed405ab2+0d91c11c6d,w.2025.44
LSST Data Management Base Package
|
Public Member Functions | |
| __iter__ (self) | |
| keys (self) | |
| values (self) | |
| items (self) | |
| __contains__ (self, name) | |
| __new__ (cls, *args, **kw) | |
| Config | copy (self) |
| __reduce__ (self) | |
| setDefaults (self) | |
| update (self, **kw) | |
| load (self, filename, root="config") | |
| loadFromStream (self, stream, root="config", filename=None, extraLocals=None) | |
| loadFromString (self, code, root="config", filename=None, extraLocals=None) | |
| save (self, filename, root="config") | |
| saveToString (self, skipImports=False) | |
| saveToStream (self, outfile, root="config", skipImports=False) | |
| freeze (self) | |
| toDict (self) | |
| names (self) | |
| validate (self) | |
| formatHistory (self, name, **kwargs) | |
| __setattr__ (self, attr, value, at=None, label="assignment") | |
| __delattr__ (self, attr, at=None, label="deletion") | |
| __eq__ (self, other) | |
| __ne__ (self, other) | |
| __str__ (self) | |
| __repr__ (self) | |
| compare (self, other, shortcut=True, rtol=1e-8, atol=1e-8, output=None) | |
| __init_subclass__ (cls, **kwargs) | |
Protected Member Functions | |
| _save (self, outfile) | |
| _collectImports (self) | |
| _rename (self, name) | |
| _fromPython (cls, config_py) | |
Protected Attributes | |
| bool | _frozen = True |
| _name = name | |
| dict | _fields = {} |
| _source = getStackFrame() | |
Static Protected Attributes | |
| dict | _storage [str, Any] |
| dict | _history [str, list[Any]] |
| set | _imports [Any] |
Properties | |
| history = property(lambda x: x._history) | |
Base class for configuration (*config*) objects.
Notes
-----
A ``Config`` object will usually have several `~lsst.pex.config.Field`
instances as class attributes. These are used to define most of the base
class behavior.
``Config`` implements a mapping API that provides many `dict`-like methods,
such as `keys`, `values`, and `items`. ``Config`` instances also support
the ``in`` operator to test if a field is in the config. Unlike a `dict`,
``Config`` classes are not subscriptable. Instead, access individual
fields as attributes of the configuration instance.
Examples
--------
Config classes are subclasses of ``Config`` that have
`~lsst.pex.config.Field` instances (or instances of
`~lsst.pex.config.Field` subclasses) as class attributes:
>>> from lsst.pex.config import Config, Field, ListField
>>> class DemoConfig(Config):
... intField = Field(doc="An integer field", dtype=int, default=42)
... listField = ListField(
... doc="List of favorite beverages.",
... dtype=str,
... default=["coffee", "green tea", "water"],
... )
>>> config = DemoConfig()
Configs support many `dict`-like APIs:
>>> config.keys()
['intField', 'listField']
>>> "intField" in config
True
Individual fields can be accessed as attributes of the configuration:
>>> config.intField
42
>>> config.listField.append("earl grey tea")
>>> print(config.listField)
['coffee', 'green tea', 'water', 'earl grey tea']
| lsst.pex.config.config.Config.__contains__ | ( | self, | |
| name ) |
Return `True` if the specified field exists in this config.
Parameters
----------
name : `str`
Field name to test for.
Returns
-------
in : `bool`
`True` if the specified field exists in the config.
Definition at line 1018 of file config.py.
| lsst.pex.config.config.Config.__delattr__ | ( | self, | |
| attr, | |||
| at = None, | |||
| label = "deletion" ) |
| lsst.pex.config.config.Config.__eq__ | ( | self, | |
| other ) |
Definition at line 1625 of file config.py.
| lsst.pex.config.config.Config.__init_subclass__ | ( | cls, | |
| ** | kwargs ) |
Run initialization for every subclass. Specifically registers the subclass with a YAML representer and YAML constructor (if pyyaml is available)
Definition at line 1694 of file config.py.
| lsst.pex.config.config.Config.__iter__ | ( | self | ) |
| lsst.pex.config.config.Config.__ne__ | ( | self, | |
| other ) |
| lsst.pex.config.config.Config.__new__ | ( | cls, | |
| * | args, | ||
| ** | kw ) |
Allocate a new `lsst.pex.config.Config` object. In order to ensure that all Config object are always in a proper state when handed to users or to derived `~lsst.pex.config.Config` classes, some attributes are handled at allocation time rather than at initialization. This ensures that even if a derived `~lsst.pex.config.Config` class implements ``__init__``, its author does not need to be concerned about when or even the base ``Config.__init__`` should be called.
Definition at line 1033 of file config.py.
| lsst.pex.config.config.Config.__reduce__ | ( | self | ) |
Reduction for pickling (function with arguments to reproduce). We need to condense and reconstitute the `~lsst.pex.config.Config`, since it may contain lambdas (as the ``check`` elements) that cannot be pickled.
Definition at line 1090 of file config.py.
| lsst.pex.config.config.Config.__repr__ | ( | self | ) |
| lsst.pex.config.config.Config.__setattr__ | ( | self, | |
| attr, | |||
| value, | |||
| at = None, | |||
| label = "assignment" ) |
Set an attribute (such as a field's value). Notes ----- Unlike normal Python objects, `~lsst.pex.config.Config` objects are locked such that no additional attributes nor properties may be added to them dynamically. Although this is not the standard Python behavior, it helps to protect users from accidentally mispelling a field name, or trying to set a non-existent field.
Definition at line 1582 of file config.py.
| lsst.pex.config.config.Config.__str__ | ( | self | ) |
|
protected |
Add module containing self to the list of things to import and then loops over all the fields in the config calling a corresponding collect method. The field method will call _collectImports on any configs it may own and return the set of things to import. This returned set will be merged with the set of imports for this config class.
Reimplemented in lsst.pex.config.configChoiceField.ConfigChoiceField.
Definition at line 1438 of file config.py.
|
protected |
Instantiate a `Config`-subclass from serialized Python form.
Parameters
----------
config_py : `str`
A serialized form of the Config as created by
`Config.saveToStream`.
Returns
-------
config : `Config`
Reconstructed `Config` instant.
Definition at line 1708 of file config.py.
|
protected |
Rename this config object in its parent `~lsst.pex.config.Config`.
Parameters
----------
name : `str`
New name for this config in its parent `~lsst.pex.config.Config`.
Notes
-----
This method uses the `~lsst.pex.config.Field.rename` method of
individual `lsst.pex.config.Field` instances.
`lsst.pex.config.Field` subclasses may need to implement a ``rename``
method for *this* method to work.
See Also
--------
lsst.pex.config.Field.rename
Reimplemented in lsst.pex.config.configChoiceField.ConfigInstanceDict.
Definition at line 1506 of file config.py.
|
protected |
Save this config to an open stream object.
Parameters
----------
outfile : file-like object
Destination file object write the config into. Accepts strings not
bytes.
Definition at line 1426 of file config.py.
| lsst.pex.config.config.Config.compare | ( | self, | |
| other, | |||
| shortcut = True, | |||
| rtol = 1e-8, | |||
| atol = 1e-8, | |||
| output = None ) |
Compare this configuration to another `~lsst.pex.config.Config` for
equality.
Parameters
----------
other : `lsst.pex.config.Config`
Other `~lsst.pex.config.Config` object to compare against this
config.
shortcut : `bool`, optional
If `True`, return as soon as an inequality is found. Default is
`True`.
rtol : `float`, optional
Relative tolerance for floating point comparisons.
atol : `float`, optional
Absolute tolerance for floating point comparisons.
output : callable, optional
A callable that takes a string, used (possibly repeatedly) to
report inequalities.
Returns
-------
isEqual : `bool`
`True` when the two `lsst.pex.config.Config` instances are equal.
`False` if there is an inequality.
See Also
--------
lsst.pex.config.compareConfigs
Notes
-----
Unselected targets of `~lsst.pex.config.RegistryField` fields and
unselected choices of `~lsst.pex.config.ConfigChoiceField` fields
are not considered by this method.
Floating point comparisons are performed by `numpy.allclose`.
Definition at line 1650 of file config.py.
| Config lsst.pex.config.config.Config.copy | ( | self | ) |
Return a deep copy of this config. Notes ----- The returned config object is not frozen, even if the original was. If a nested config object is copied, it retains the name from its original hierarchy. Nested objects are only shared between the new and old configs if they are not possible to modify via the config's interfaces (e.g. entries in the the history list are not copied, but the lists themselves are, so modifications to one copy do not modify the other).
Reimplemented in lsst.pex.config.configurableActions._configurableAction.ConfigurableAction.
Definition at line 1066 of file config.py.
| lsst.pex.config.config.Config.formatHistory | ( | self, | |
| name, | |||
| ** | kwargs ) |
Format a configuration field's history to a human-readable format.
Parameters
----------
name : `str`
Name of a `~lsst.pex.config.Field` in this config.
**kwargs
Keyword arguments passed to `lsst.pex.config.history.format`.
Returns
-------
history : `str`
A string containing the formatted history.
See Also
--------
lsst.pex.config.history.format
Definition at line 1555 of file config.py.
| lsst.pex.config.config.Config.freeze | ( | self | ) |
Make this config, and all subconfigs, read-only.
Reimplemented in lsst.pex.config.configChoiceField.ConfigChoiceField, and lsst.pex.config.configChoiceField.ConfigInstanceDict.
Definition at line 1420 of file config.py.
| lsst.pex.config.config.Config.items | ( | self | ) |
Get configurations as ``(field name, field value)`` pairs.
Returns
-------
items : `~collections.abc.ItemsView`
Iterator of tuples for each configuration. Tuple items are:
0. Field name.
1. Field value.
Definition at line 1005 of file config.py.
| lsst.pex.config.config.Config.keys | ( | self | ) |
Get field names.
Returns
-------
names : `~collections.abc.KeysView`
List of `lsst.pex.config.Field` names.
Definition at line 985 of file config.py.
| lsst.pex.config.config.Config.load | ( | self, | |
| filename, | |||
| root = "config" ) |
Modify this config in place by executing the Python code in a
configuration file.
Parameters
----------
filename : `str`
Name of the configuration file. A configuration file is Python
module.
root : `str`, optional
Name of the variable in file that refers to the config being
overridden.
For example, the value of root is ``"config"`` and the file
contains::
config.myField = 5
Then this config's field ``myField`` is set to ``5``.
See Also
--------
lsst.pex.config.Config.loadFromStream
lsst.pex.config.Config.loadFromString
lsst.pex.config.Config.save
lsst.pex.config.Config.saveToStream
lsst.pex.config.Config.saveToString
Definition at line 1174 of file config.py.
| lsst.pex.config.config.Config.loadFromStream | ( | self, | |
| stream, | |||
| root = "config", | |||
| filename = None, | |||
| extraLocals = None ) |
Modify this Config in place by executing the Python code in the
provided stream.
Parameters
----------
stream : file-like object, `str`, `bytes`, or `~types.CodeType`
Stream containing configuration override code. If this is a
code object, it should be compiled with ``mode="exec"``.
root : `str`, optional
Name of the variable in file that refers to the config being
overridden.
For example, the value of root is ``"config"`` and the file
contains::
config.myField = 5
Then this config's field ``myField`` is set to ``5``.
filename : `str`, optional
Name of the configuration file, or `None` if unknown or contained
in the stream. Used for error reporting.
extraLocals : `dict` of `str` to `object`, optional
Any extra variables to include in local scope when loading.
Notes
-----
For backwards compatibility reasons, this method accepts strings, bytes
and code objects as well as file-like objects. New code should use
`loadFromString` instead for most of these types.
See Also
--------
lsst.pex.config.Config.load
lsst.pex.config.Config.loadFromString
lsst.pex.config.Config.save
lsst.pex.config.Config.saveToStream
lsst.pex.config.Config.saveToString
Definition at line 1206 of file config.py.
| lsst.pex.config.config.Config.loadFromString | ( | self, | |
| code, | |||
| root = "config", | |||
| filename = None, | |||
| extraLocals = None ) |
Modify this Config in place by executing the Python code in the
provided string.
Parameters
----------
code : `str`, `bytes`, or `~types.CodeType`
Stream containing configuration override code.
root : `str`, optional
Name of the variable in file that refers to the config being
overridden.
For example, the value of root is ``"config"`` and the file
contains::
config.myField = 5
Then this config's field ``myField`` is set to ``5``.
filename : `str`, optional
Name of the configuration file, or `None` if unknown or contained
in the stream. Used for error reporting.
extraLocals : `dict` of `str` to `object`, optional
Any extra variables to include in local scope when loading.
Raises
------
ValueError
Raised if a key in extraLocals is the same value as the value of
the root argument.
See Also
--------
lsst.pex.config.Config.load
lsst.pex.config.Config.loadFromStream
lsst.pex.config.Config.save
lsst.pex.config.Config.saveToStream
lsst.pex.config.Config.saveToString
Definition at line 1253 of file config.py.
| lsst.pex.config.config.Config.names | ( | self | ) |
Get all the field names in the config, recursively.
Returns
-------
names : `list` of `str`
Field names.
Definition at line 1476 of file config.py.
| lsst.pex.config.config.Config.save | ( | self, | |
| filename, | |||
| root = "config" ) |
Save a Python script to the named file, which, when loaded,
reproduces this config.
Parameters
----------
filename : `str`
Desination filename of this configuration.
root : `str`, optional
Name to use for the root config variable. The same value must be
used when loading (see `lsst.pex.config.Config.load`).
See Also
--------
lsst.pex.config.Config.saveToStream
lsst.pex.config.Config.saveToString
lsst.pex.config.Config.load
lsst.pex.config.Config.loadFromStream
lsst.pex.config.Config.loadFromString
Reimplemented in lsst.pex.config.configChoiceField.ConfigChoiceField.
Definition at line 1309 of file config.py.
| lsst.pex.config.config.Config.saveToStream | ( | self, | |
| outfile, | |||
| root = "config", | |||
| skipImports = False ) |
Save a configuration file to a stream, which, when loaded,
reproduces this config.
Parameters
----------
outfile : file-like object
Destination file object write the config into. Accepts strings not
bytes.
root : `str`, optional
Name to use for the root config variable. The same value must be
used when loading (see `lsst.pex.config.Config.load`).
skipImports : `bool`, optional
If `True` then do not include ``import`` statements in output,
this is to support human-oriented output from ``pipetask`` where
additional clutter is not useful.
See Also
--------
lsst.pex.config.Config.save
lsst.pex.config.Config.saveToString
lsst.pex.config.Config.load
lsst.pex.config.Config.loadFromStream
lsst.pex.config.Config.loadFromString
Definition at line 1371 of file config.py.
| lsst.pex.config.config.Config.saveToString | ( | self, | |
| skipImports = False ) |
Return the Python script form of this configuration as an executable
string.
Parameters
----------
skipImports : `bool`, optional
If `True` then do not include ``import`` statements in output,
this is to support human-oriented output from ``pipetask`` where
additional clutter is not useful.
Returns
-------
code : `str`
A code string readable by `loadFromString`.
See Also
--------
lsst.pex.config.Config.save
lsst.pex.config.Config.saveToStream
lsst.pex.config.Config.load
lsst.pex.config.Config.loadFromStream
lsst.pex.config.Config.loadFromString
Definition at line 1343 of file config.py.
| lsst.pex.config.config.Config.setDefaults | ( | self | ) |
Subclass hook for computing defaults. Notes ----- Derived `~lsst.pex.config.Config` classes that must compute defaults rather than using the `~lsst.pex.config.Field` instances's defaults should do so here. To correctly use inherited defaults, implementations of ``setDefaults`` must call their base class's ``setDefaults``.
Reimplemented in lsst.pipe.tasks.background.MaskObjectsConfig, lsst.pipe.tasks.dataFrameActions._actions.NanoJansky, lsst.pipe.tasks.measurementDriver.ForcedMeasurementDriverConfig, lsst.ip.diffim.dipoleMeasurement.DipoleMeasurementConfig, lsst.ip.diffim.subtractImages.AlardLuptonSubtractBaseConfig, lsst.ip.isr.ampOffset.AmpOffsetConfig, lsst.meas.algorithms.computeExPsf.ComputeExPsfConfig, lsst.meas.algorithms.measureApCorr.MeasureApCorrConfig, lsst.meas.algorithms.noise_covariance.ComputeNoiseCorrelationConfig, lsst.meas.algorithms.normalizedCalibrationFlux.NormalizedCalibrationFluxConfig, lsst.meas.algorithms.scaleVariance.ScaleVarianceConfig, lsst.meas.base.forcedMeasurement.ForcedMeasurementConfig, lsst.meas.base.simple_forced_measurement.SimpleForcedMeasurementConfig, lsst.meas.modelfit.cmodel.cmodelContinued.CModelForcedConfig, lsst.meas.modelfit.cmodel.cmodelContinued.CModelSingleFrameConfig, lsst.meas.modelfit.psf.psfContinued.GeneralShapeletPsfApproxForcedConfig, and lsst.meas.modelfit.psf.psfContinued.GeneralShapeletPsfApproxSingleFrameConfig.
Definition at line 1103 of file config.py.
| lsst.pex.config.config.Config.toDict | ( | self | ) |
Make a dictionary of field names and their values.
Returns
-------
dict_ : `dict`
Dictionary with keys that are `~lsst.pex.config.Field` names.
Values are `~lsst.pex.config.Field` values.
See Also
--------
lsst.pex.config.Field.toDict
Notes
-----
This method uses the `~lsst.pex.config.Field.toDict` method of
individual fields. Subclasses of `~lsst.pex.config.Field` may need to
implement a ``toDict`` method for *this* method to work.
Reimplemented in lsst.pex.config.configChoiceField.ConfigChoiceField.
Definition at line 1452 of file config.py.
| lsst.pex.config.config.Config.update | ( | self, | |
| ** | kw ) |
Update values of fields specified by the keyword arguments.
Parameters
----------
**kw
Keywords are configuration field names. Values are configuration
field values.
Notes
-----
The ``__at`` and ``__label`` keyword arguments are special internal
keywords. They are used to strip out any internal steps from the
history tracebacks of the config. Do not modify these keywords to
subvert a `~lsst.pex.config.Config` instance's history.
Examples
--------
This is a config with three fields:
>>> from lsst.pex.config import Config, Field
>>> class DemoConfig(Config):
... fieldA = Field(doc="Field A", dtype=int, default=42)
... fieldB = Field(doc="Field B", dtype=bool, default=True)
... fieldC = Field(doc="Field C", dtype=str, default="Hello world")
>>> config = DemoConfig()
These are the default values of each field:
>>> for name, value in config.iteritems():
... print(f"{name}: {value}")
fieldA: 42
fieldB: True
fieldC: 'Hello world'
Using this method to update ``fieldA`` and ``fieldC``:
>>> config.update(fieldA=13, fieldC="Updated!")
Now the values of each field are:
>>> for name, value in config.iteritems():
... print(f"{name}: {value}")
fieldA: 13
fieldB: True
fieldC: 'Updated!'
Definition at line 1116 of file config.py.
| lsst.pex.config.config.Config.validate | ( | self | ) |
Validate the Config, raising an exception if invalid.
Raises
------
lsst.pex.config.FieldValidationError
Raised if verification fails.
Notes
-----
The base class implementation performs type checks on all fields by
calling their `~lsst.pex.config.Field.validate` methods.
Complex single-field validation can be defined by deriving new Field
types. For convenience, some derived `lsst.pex.config.Field`-types
(`~lsst.pex.config.ConfigField` and
`~lsst.pex.config.ConfigChoiceField`) are defined in
``lsst.pex.config`` that handle recursing into subconfigs.
Inter-field relationships should only be checked in derived
`~lsst.pex.config.Config` classes after calling this method, and base
validation is complete.
Reimplemented in lsst.fgcmcal.sedterms.Sedterm, lsst.pex.config.configChoiceField.ConfigChoiceField, lsst.pex.config.configurableActions.tests.ActionTest1, lsst.pex.config.configurableActions.tests.ActionTest2, lsst.pex.config.configurableActions.tests.ActionTest3, lsst.pex.config.configurableActions.tests.TestDivideAction, lsst.pipe.tasks.background.MaskObjectsConfig, lsst.pipe.tasks.measurementDriver.MeasurementDriverBaseConfig, lsst.afw.geom.transformConfig.RadialTransformConfig, lsst.ip.isr.ampOffset.AmpOffsetConfig, lsst.meas.algorithms.gaussianPsfFactory.GaussianPsfFactory, lsst.meas.algorithms.measureApCorr.MeasureApCorrConfig, lsst.meas.algorithms.treecorrUtils.TreecorrConfig, lsst.meas.base.baseMeasurement.BaseMeasurementConfig, lsst.meas.base.baseMeasurement.SimpleBaseMeasurementConfig, and lsst.meas.base.compensatedGaussian._compensatedTophat.SingleFrameCompensatedTophatFluxConfig.
Definition at line 1529 of file config.py.
| lsst.pex.config.config.Config.values | ( | self | ) |
Get field values.
Returns
-------
values : `~collections.abc.ValuesView`
Iterator of field values.
Definition at line 995 of file config.py.
|
protectedinherited |
|
protected |
|
staticprotected |
|
staticprotected |
|
protectedinherited |
|
staticprotected |
|
static |