WarpedPsf.cc File Reference

#include "lsst/geom/AffineTransform.h"
#include "lsst/geom/Box.h"
#include "lsst/pex/exceptions.h"
#include "lsst/meas/algorithms/WarpedPsf.h"
#include "lsst/afw/math/warpExposure.h"
#include "lsst/afw/image/Image.h"
#include "lsst/afw/table/io/InputArchive.h"
#include "lsst/afw/table/io/OutputArchive.h"
#include "lsst/afw/table/io/CatalogVector.h"
#include "lsst/afw/table/io/Persistable.cc"

Go to the source code of this file.

Namespaces
namespace	lsst
namespace	lsst::afw
namespace	lsst::afw::table
namespace	lsst::afw::table::io
namespace	lsst::meas
namespace	lsst::meas::algorithms

Functions
virtual std::shared_ptr< afw::table::io::Persistable >	read (afw::table::io::InputArchive const &archive, afw::table::io::CatalogVector const &catalogs) const

Function Documentation

read()

std::shared_ptr< afw::table::io::Persistable > read ( afw::table::io::InputArchive const & archive, afw::table::io::CatalogVector const & catalogs ) const

inlinevirtual

Definition at line 1 of file WarpedPsf.cc.

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 */
 
#include "lsst/geom/AffineTransform.h"
#include "lsst/geom/Box.h"
#include "lsst/pex/exceptions.h"
#include "lsst/meas/algorithms/WarpedPsf.h"
#include "lsst/afw/math/warpExposure.h"
#include "lsst/afw/image/Image.h"
#include "lsst/afw/table/io/InputArchive.h"
#include "lsst/afw/table/io/OutputArchive.h"
#include "lsst/afw/table/io/CatalogVector.h"
#include "lsst/afw/table/io/Persistable.cc"
 
namespace lsst {
namespace afw {
namespace table {
namespace io {
 
template std::shared_ptr<meas::algorithms::WarpedPsf>
PersistableFacade<meas::algorithms::WarpedPsf>::dynamicCast(std::shared_ptr<Persistable> const &);
 
}  // namespace io
}  // namespace table
}  // namespace afw
 
namespace meas {
namespace algorithms {
 
namespace {
 
// TODO: make this routine externally callable and more generic using templates
//  (also useful in e.g. math/offsetImage.cc)
std::shared_ptr<afw::detection::Psf::Image> zeroPadImage(afw::detection::Psf::Image const &im, int xPad,
                                                         int yPad) {
    int nx = im.getWidth();
    int ny = im.getHeight();
 
    auto out = std::make_shared<afw::detection::Psf::Image>(nx + 2 * xPad, ny + 2 * yPad);
    out->setXY0(im.getX0() - xPad, im.getY0() - yPad);
 
    geom::Box2I box(geom::Point2I(xPad, yPad), geom::Extent2I(nx, ny));
    out->assign(im, box, afw::image::LOCAL);
 
    return out;
}
 
geom::Box2I computeBBoxFromTransform(geom::Box2I const bbox, geom::AffineTransform const &t) {
    // This is the maximum scaling I can imagine we'd want - it's approximately what you'd
    // get from trying to coadd 2"-pixel data (e.g. 2MASS) onto a 0.01"-pixel grid (e.g.
    // from JWST).  Anything beyond that is probably a bug elsewhere in the code, and
    // catching that can save us from segfaults and catastrophic memory consumption.
    static const double maxTransformCoeff = 200.0;
 
    if (t.getLinear().getMatrix().lpNorm<Eigen::Infinity>() > maxTransformCoeff) {
        throw LSST_EXCEPT(pex::exceptions::RangeError, "Unexpectedly large transform passed to WarpedPsf");
    }
 
    // Floating point version of input bbox (expanded to include entire pixels).
    geom::Box2D in_box_fp(bbox);
    // Floating point version of output bbox (to be populated as bbox of
    // transformed points.
    geom::Box2D out_box_fp;
    auto const in_corners = in_box_fp.getCorners();
    for (auto const & in_corner : in_corners) {
        auto out_corner = t(in_corner);
        out_box_fp.include(out_corner);
    }
 
    // We want to guarantee that the output bbox has odd dimensions, so instead
    // of using the Box2I converting constructor directly, we start with (0, 0)
    // and dilate by the floating-point box's half-dimensions.
    geom::Extent2I out_half_dims = geom::floor(0.5*out_box_fp.getDimensions());
    geom::Box2I out_box;
    geom::Point2I out_center(0, 0);
    out_box.include(out_center);
    return out_box.dilatedBy(out_half_dims);
}
 
std::shared_ptr<afw::detection::Psf::Image> warpAffine(afw::detection::Psf::Image const &im,
                                                       geom::AffineTransform const &srcToDest,
                                                       afw::math::WarpingControl const &wc) {
    std::shared_ptr<afw::geom::TransformPoint2ToPoint2> srcToDestTransform =
            afw::geom::makeTransform(srcToDest);
 
    afw::math::SeparableKernel const &kernel = *wc.getWarpingKernel();
    geom::Point2I const &center = kernel.getCtr();
    int const xPad = std::max(center.getX(), kernel.getWidth() - center.getX());
    int const yPad = std::max(center.getY(), kernel.getHeight() - center.getY());
 
    // allocate output image
    geom::Box2I bbox = computeBBoxFromTransform(im.getBBox(), srcToDest);
 
    auto ret = std::make_shared<afw::detection::Psf::Image>(bbox);
 
    // zero-pad input image
    std::shared_ptr<afw::detection::Psf::Image> im_padded = zeroPadImage(im, xPad, yPad);
 
    // warp it!
    afw::math::warpImage(*ret, *im_padded, *srcToDestTransform, wc, 0.0);
    return ret;
}
 
// A helper struct for logic and intermediate results used by both
// doComputeKernelImage and doComputeBBox.
//
// This linearizes the transform from destination to source coordinates, then
// computes both a source position that corresponds to a rounded version of the
// destination position and a transform from source to destination that also
// undoes the rounding.
struct PreparedTransforms {
 
    static PreparedTransforms compute(
        afw::detection::Psf const & src_psf,
        afw::geom::TransformPoint2ToPoint2 const & distortion,
        geom::PointD const & dest_position
    ) {
        // Linearize the transform from destination coordinates to source
        // coordinates to avoid expensive WCS calls.
        geom::AffineTransform dest_to_src = afw::geom::linearizeTransform(
            *distortion.inverted(),
            dest_position
        );
        // Instead of calling computeKernelImage on the source PSFs, we want to
        // call computeImage with the source coordinate version of an
        // integer-valued destination coordinate; that gives the lower-level PSF
        // model the responsibility of doing the shifting from integer to
        // fractional source coordinates, and it may be able to do a better job of
        // that than we could do here (by e.g. using an internal analytic or
        // oversampled model).  So here's that integer-valued destination position
        // and the corresponding source position.
        geom::Point2D rounded_dest_position(
            std::round(dest_position.getX()),
            std::round(dest_position.getY())
        );
        auto src_position = dest_to_src(rounded_dest_position);
        // Now we want to warp by the inverse of src_to_dest, but we want the
        // image to be centered at (0, 0), not rounded_dest_position, so we
        // compose that trivial shift with the dest_to_src transform.
        auto src_to_dest = geom::AffineTransform(dest_to_src.inverted());
        auto unround = geom::AffineTransform(-geom::Extent2D(rounded_dest_position));
        auto src_to_dest_unrounded = unround * src_to_dest;
        return PreparedTransforms{src_position, src_to_dest_unrounded};
    }
 
    geom::Point2D src_position;
    geom::AffineTransform src_to_dest_unrounded;
};
 
}  // namespace
 
WarpedPsf::WarpedPsf(std::shared_ptr<afw::detection::Psf const> undistortedPsf,
                     std::shared_ptr<afw::geom::TransformPoint2ToPoint2 const> distortion,
                     std::shared_ptr<afw::math::WarpingControl const> control)
        : ImagePsf(false),
          _undistortedPsf(undistortedPsf),
          _distortion(distortion),
          _warpingControl(control) {
    _init();
}
 
WarpedPsf::WarpedPsf(std::shared_ptr<afw::detection::Psf const> undistortedPsf,
                     std::shared_ptr<afw::geom::TransformPoint2ToPoint2 const> distortion,
                     std::string const &kernelName, unsigned int cache)
        : ImagePsf(false),
          _undistortedPsf(undistortedPsf),
          _distortion(distortion),
          _warpingControl(new afw::math::WarpingControl(kernelName, "", cache)) {
    _init();
}
 
void WarpedPsf::_init() {
    if (!_undistortedPsf) {
        throw LSST_EXCEPT(pex::exceptions::LogicError,
                          "Undistorted Psf passed to WarpedPsf must not be None/NULL");
    }
    if (!_distortion) {
        throw LSST_EXCEPT(pex::exceptions::LogicError, "Transform passed to WarpedPsf must not be None/NULL");
    }
    if (!_warpingControl) {
        throw LSST_EXCEPT(pex::exceptions::LogicError,
                          "WarpingControl passed to WarpedPsf must not be None/NULL");
    }
}
 
geom::Point2D WarpedPsf::getAveragePosition() const {
    return _distortion->applyForward(_undistortedPsf->getAveragePosition());
}
 
std::shared_ptr<afw::detection::Psf> WarpedPsf::clone() const {
    return std::make_shared<WarpedPsf>(_undistortedPsf->clone(), _distortion, _warpingControl);
}
 
std::shared_ptr<afw::detection::Psf> WarpedPsf::resized(int width, int height) const {
    // For a given set of requested dimensions and distortion, it is not guaranteed that a
    // _undistortedPsf would exist to manifest those dimensions after distortion
    // Not possible to implement with member data currently in WarpedPsf
    throw LSST_EXCEPT(pex::exceptions::LogicError, "Not Implemented");
}
 
std::shared_ptr<afw::detection::Psf::Image> WarpedPsf::doComputeKernelImage(
        geom::Point2D const &position, afw::image::Color const &color) const {
    auto prepared_transforms = PreparedTransforms::compute(*_undistortedPsf, *_distortion, position);
    std::shared_ptr<Image> src_im = _undistortedPsf->computeImage(prepared_transforms.src_position, color);
    std::shared_ptr<afw::detection::Psf::Psf::Image> ret = warpAffine(
        *src_im,
        prepared_transforms.src_to_dest_unrounded,
        *_warpingControl
    );
 
    double normFactor = 1.0;
    //
    // Normalize the output image to sum 1
    // FIXME defining a member function Image::getSum() would be convenient here and in other places
    //
    normFactor = 0.0;
    for (int y = 0; y != ret->getHeight(); ++y) {
        afw::detection::Psf::Image::x_iterator imEnd = ret->row_end(y);
        for (afw::detection::Psf::Image::x_iterator imPtr = ret->row_begin(y); imPtr != imEnd; imPtr++) {
            normFactor += *imPtr;
        }
    }
    if (normFactor == 0.0) {
        throw LSST_EXCEPT(pex::exceptions::InvalidParameterError, "psf image has sum 0");
    }
    *ret /= normFactor;
    return ret;
}
 
geom::Box2I WarpedPsf::doComputeBBox(geom::Point2D const &position, afw::image::Color const &color) const {
    auto prepared_transforms = PreparedTransforms::compute(*_undistortedPsf, *_distortion, position);
    auto src_bbox = _undistortedPsf->computeImageBBox(prepared_transforms.src_position, color);
    return computeBBoxFromTransform(src_bbox, prepared_transforms.src_to_dest_unrounded);
}
 
namespace {
 
struct PersistenceHelper {
    afw::table::Schema schema;
    afw::table::Key<int> psfIndex;
    afw::table::Key<int> transformIndex;
    afw::table::Key<int> controlIndex;
 
    static PersistenceHelper const &get() {
        static PersistenceHelper const instance;
        return instance;
    }
 
private:
    PersistenceHelper()
            : schema(),
              psfIndex(schema.addField<int>("psfIndex", "archive ID of nested Psf object")),
              transformIndex(schema.addField<int>("transformIndex", "archive ID of nested Transform object")),
              controlIndex(
                      schema.addField<int>("controlIndex", "archive ID of nested WarpingControl object")) {}
};
 
std::string _getPersistenceName() { return "WarpedPsf"; }
 
class : public afw::table::io::PersistableFactory {
public:
    virtual std::shared_ptr<afw::table::io::Persistable> read(
            afw::table::io::InputArchive const &archive,
            afw::table::io::CatalogVector const &catalogs) const {
        static PersistenceHelper const &keys = PersistenceHelper::get();
        LSST_ARCHIVE_ASSERT(catalogs.size() == 1u);
        LSST_ARCHIVE_ASSERT(catalogs.front().size() == 1u);
        afw::table::BaseRecord const &record = catalogs.front().front();
        LSST_ARCHIVE_ASSERT(record.getSchema() == keys.schema);
        return std::make_shared<WarpedPsf>(
                archive.get<afw::detection::Psf>(record.get(keys.psfIndex)),
                archive.get<afw::geom::TransformPoint2ToPoint2>(record.get(keys.transformIndex)),
                archive.get<afw::math::WarpingControl>(record.get(keys.controlIndex)));
    }
 
    using afw::table::io::PersistableFactory::PersistableFactory;
} warpedPsfFactory(_getPersistenceName());
 
}  // namespace
 
std::string WarpedPsf::getPersistenceName() const { return _getPersistenceName(); }
std::string WarpedPsf::getPythonModule() const { return "lsst.meas.algorithms"; }
 
void WarpedPsf::write(OutputArchiveHandle &handle) const {
    static PersistenceHelper const &keys = PersistenceHelper::get();
    afw::table::BaseCatalog catalog = handle.makeCatalog(keys.schema);
    std::shared_ptr<afw::table::BaseRecord> record = catalog.addNew();
 
    record->set(keys.psfIndex, handle.put(_undistortedPsf));
    record->set(keys.transformIndex, handle.put(_distortion));
    record->set(keys.controlIndex, handle.put(_warpingControl));
 
    handle.saveCatalog(catalog);
}
 
}  // namespace algorithms
}  // namespace meas
}  // namespace lsst

Variable Documentation

controlIndex

afw::table::Key<int> controlIndex

Definition at line 276 of file WarpedPsf.cc.

psfIndex

afw::table::Key<int> psfIndex

Definition at line 274 of file WarpedPsf.cc.

schema

afw::table::Schema schema

Definition at line 273 of file WarpedPsf.cc.

src_position

geom::Point2D src_position

Definition at line 180 of file WarpedPsf.cc.

src_to_dest_unrounded

geom::AffineTransform src_to_dest_unrounded

Definition at line 181 of file WarpedPsf.cc.

transformIndex

afw::table::Key<int> transformIndex

Definition at line 275 of file WarpedPsf.cc.