utils.py

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#
# LSST Data Management System
# Copyright 2008-2017 LSST/AURA.
#
# This product includes software developed by the
# LSST Project (http://www.lsst.org/).
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the LSST License Statement and
# the GNU General Public License along with this program.  If not,
# see <http://www.lsstcorp.org/LegalNotices/>.
#
 
__all__ = ["clipImage", "resetFilters", "defineFilter",
           "projectImage", "getProjectionIndices"]
 
from deprecated.sphinx import deprecated
 
import numpy as np
 
import lsst.afw.detection as afwDetect
from .maskedImage import MaskedImage, makeMaskedImage
from .image import Mask
from .filter import Filter, FilterProperty
 
 
def clipImage(im, minClip, maxClip):
    """Clip an image to lie between minClip and maxclip (None to ignore)"""
    if isinstance(im, MaskedImage):
        mi = im
    else:
        mi = makeMaskedImage(im, Mask(im.getDimensions()))
 
    if minClip is not None:
        ds = afwDetect.FootprintSet(
            mi, afwDetect.Threshold(-minClip, afwDetect.Threshold.VALUE, False))
        afwDetect.setImageFromFootprintList(
            mi.getImage(), ds.getFootprints(), minClip)
 
    if maxClip is not None:
        ds = afwDetect.FootprintSet(mi, afwDetect.Threshold(maxClip))
        afwDetect.setImageFromFootprintList(
            mi.getImage(), ds.getFootprints(), maxClip)
 
 
@deprecated(reason=("Removed with no replacement (FilterLabels do not need to be reset)."
                    " Will be removed after v22."), category=FutureWarning, version="v22")
def resetFilters():
    """Reset registry of filters and filter properties"""
    Filter.reset()
    FilterProperty.reset()
 
 
@deprecated(reason=("Removed with no replacement (but see lsst::afw::image::TransmissionCurve for how to set"
                    "and retrieve filter wavelength information). Will be removed after v22."),
            category=FutureWarning, version="v22")
def defineFilter(name, lambdaEff, lambdaMin=np.nan, lambdaMax=np.nan, alias=[], force=False):
    """Define a filter and its properties in the filter registry"""
    prop = FilterProperty(name, lambdaEff, lambdaMin, lambdaMax, force)
    Filter.define(prop)
    if isinstance(alias, str):
        Filter.defineAlias(name, alias)
    else:
        for a in alias:
            Filter.defineAlias(name, a)
 
 
def getProjectionIndices(imageBBox, targetBBox):
    """Get the indices to project an image
 
    Given an image and target bounding box,
    calculate the indices needed to appropriately
    slice the input image and target image to
    project the image to the target.
 
    Parameters
    ----------
    imageBBox: Box2I
        Bounding box of the input image
    targetBBox: Box2I
        Bounding box of the target image
 
    Returns
    -------
    targetSlices: tuple
        Slices of the target image in the form (by, bx), (iy, ix).
    imageIndices: tuple
        Slices of the input image in the form (by, bx), (iy, ix).
    """
    def getMin(dXmin):
        """Get minimum indices"""
        if dXmin < 0:
            bxStart = -dXmin
            ixStart = 0
        else:
            bxStart = 0
            ixStart = dXmin
        return bxStart, ixStart
 
    def getMax(dXmax):
        """Get maximum indices"""
        if dXmax < 0:
            bxEnd = None
            ixEnd = dXmax
        elif dXmax != 0:
            bxEnd = -dXmax
            ixEnd = None
        else:
            bxEnd = ixEnd = None
        return bxEnd, ixEnd
 
    dXmin = targetBBox.getMinX() - imageBBox.getMinX()
    dXmax = targetBBox.getMaxX() - imageBBox.getMaxX()
    dYmin = targetBBox.getMinY() - imageBBox.getMinY()
    dYmax = targetBBox.getMaxY() - imageBBox.getMaxY()
 
    bxStart, ixStart = getMin(dXmin)
    byStart, iyStart = getMin(dYmin)
    bxEnd, ixEnd = getMax(dXmax)
    byEnd, iyEnd = getMax(dYmax)
 
    bx = slice(bxStart, bxEnd)
    by = slice(byStart, byEnd)
    ix = slice(ixStart, ixEnd)
    iy = slice(iyStart, iyEnd)
    return (by, bx), (iy, ix)
 
 
def projectImage(image, bbox, fill=0):
    """Project an image into a bounding box
 
    Return a new image whose pixels are equal to those of
    `image` within `bbox`, and equal to `fill` outside.
 
    Parameters
    ----------
    image: `afw.Image` or `afw.MaskedImage`
        The image to project
    bbox: `Box2I`
        The bounding box to project onto.
    fill: number
        The value to fill the region of the new
        image outside the bounding box of the original.
 
    Returns
    -------
    newImage: `afw.Image` or `afw.MaskedImage`
        The new image with the input image projected
        into its bounding box.
    """
    if image.getBBox() == bbox:
        return image
    (by, bx), (iy, ix) = getProjectionIndices(image.getBBox(), bbox)
 
    if isinstance(image, MaskedImage):
        newImage = type(image.image)(bbox)
        newImage.array[by, bx] = image.image.array[iy, ix]
        newMask = type(image.mask)(bbox)
        newMask.array[by, bx] = image.mask.array[iy, ix]
        newVariance = type(image.image)(bbox)
        newVariance.array[by, bx] = image.variance.array[iy, ix]
        newImage = MaskedImage(image=newImage, mask=newMask, variance=newVariance, dtype=newImage.array.dtype)
    else:
        newImage = type(image)(bbox)
        if fill != 0:
            newImage.set(fill)
        newImage.array[by, bx] = image.array[iy, ix]
    return newImage