lsst.meas.algorithms.testUtils Namespace Reference

Functions
def	plantSources (bbox, kwid, sky, coordList, addPoissonNoise=True)
def	makeRandomTransmissionCurve (rng, minWavelength=4000.0, maxWavelength=7000.0, nWavelengths=200, maxRadius=80.0, nRadii=30, perturb=0.05)

Function Documentation

makeRandomTransmissionCurve()

def lsst.meas.algorithms.testUtils.makeRandomTransmissionCurve	(		rng,
			minWavelength = 4000.0,
			maxWavelength = 7000.0,
			nWavelengths = 200,
			maxRadius = 80.0,
			nRadii = 30,
			perturb = 0.05
	)

Create a random TransmissionCurve with nontrivial spatial and
wavelength variation.

Parameters
----------
rng : numpy.random.RandomState
    Random number generator.
minWavelength : float
    Average minimum wavelength for generated TransmissionCurves (will be
    randomly perturbed).
maxWavelength : float
    Average maximum wavelength for generated TransmissionCurves (will be
    randomly perturbed).
nWavelengths : int
    Number of samples in the wavelength dimension.
maxRadius : float
    Average maximum radius for spatial variation (will be perturbed).
nRadii : int
    Number of samples in the radial dimension.
perturb: float
    Fraction by which wavelength and radius bounds should be randomly
    perturbed.

Definition at line 89 of file testUtils.py.

                                maxRadius=80.0, nRadii=30, perturb=0.05):
    """Create a random TransmissionCurve with nontrivial spatial and
    wavelength variation.

    Parameters
    ----------
    rng : numpy.random.RandomState
        Random number generator.
    minWavelength : float
        Average minimum wavelength for generated TransmissionCurves (will be
        randomly perturbed).
    maxWavelength : float
        Average maximum wavelength for generated TransmissionCurves (will be
        randomly perturbed).
    nWavelengths : int
        Number of samples in the wavelength dimension.
    maxRadius : float
        Average maximum radius for spatial variation (will be perturbed).
    nRadii : int
        Number of samples in the radial dimension.
    perturb: float
        Fraction by which wavelength and radius bounds should be randomly
        perturbed.
    """
    dWavelength = maxWavelength - minWavelength

    def perturbed(x, s=perturb*dWavelength):
        return x + 2.0*s*(rng.rand() - 0.5)

    wavelengths = np.linspace(perturbed(minWavelength), perturbed(maxWavelength), nWavelengths)
    radii = np.linspace(0.0, perturbed(maxRadius, perturb*maxRadius), nRadii)
    throughput = np.zeros(wavelengths.shape + radii.shape, dtype=float)
    # throughput will be a rectangle in wavelength, shifting to higher wavelengths and shrinking
    # in height with radius, going to zero at all bounds.
    peak0 = perturbed(0.9, 0.05)
    start0 = perturbed(minWavelength + 0.25*dWavelength)
    stop0 = perturbed(minWavelength + 0.75*dWavelength)
    for i, r in enumerate(radii):
        mask = np.logical_and(wavelengths >= start0 + r, wavelengths <= stop0 + r)
        throughput[mask, i] = peak0*(1.0 - r/1000.0)
    return afwImage.TransmissionCurve.makeRadial(throughput, wavelengths, radii)

plantSources()

def lsst.meas.algorithms.testUtils.plantSources	(		bbox,
			kwid,
			sky,
			coordList,
			addPoissonNoise = True
	)

Make an exposure with stars (modelled as Gaussians)

@param bbox: parent bbox of exposure
@param kwid: kernel width (and height; kernel is square)
@param sky: amount of sky background (counts)
@param coordList: a list of [x, y, counts, sigma], where:
    * x,y are relative to exposure origin
    * counts is the integrated counts for the star
    * sigma is the Gaussian sigma in pixels
@param addPoissonNoise: add Poisson noise to the exposure?

Definition at line 31 of file testUtils.py.

def plantSources(bbox, kwid, sky, coordList, addPoissonNoise=True):
    """Make an exposure with stars (modelled as Gaussians)

    @param bbox: parent bbox of exposure
    @param kwid: kernel width (and height; kernel is square)
    @param sky: amount of sky background (counts)
    @param coordList: a list of [x, y, counts, sigma], where:
        * x,y are relative to exposure origin
        * counts is the integrated counts for the star
        * sigma is the Gaussian sigma in pixels
    @param addPoissonNoise: add Poisson noise to the exposure?
    """
    # make an image with sources
    img = afwImage.ImageD(bbox)
    meanSigma = 0.0
    for coord in coordList:
        x, y, counts, sigma = coord
        meanSigma += sigma

        # make a single gaussian psf
        psf = SingleGaussianPsf(kwid, kwid, sigma)

        # make an image of it and scale to the desired number of counts
        thisPsfImg = psf.computeImage(lsst.geom.PointD(x, y))
        thisPsfImg *= counts

        # bbox a window in our image and add the fake star image
        psfBox = thisPsfImg.getBBox()
        psfBox.clip(bbox)
        if psfBox != thisPsfImg.getBBox():
            thisPsfImg = thisPsfImg[psfBox, afwImage.PARENT]
        imgSeg = img[psfBox, afwImage.PARENT]
        imgSeg += thisPsfImg
    meanSigma /= len(coordList)

    img += sky

    # add Poisson noise
    if (addPoissonNoise):
        np.random.seed(seed=1)  # make results reproducible
        imgArr = img.getArray()
        imgArr[:] = np.random.poisson(imgArr)

    # bundle into a maskedimage and an exposure
    mask = afwImage.Mask(bbox)
    var = img.convertFloat()
    img -= sky
    mimg = afwImage.MaskedImageF(img.convertFloat(), mask, var)
    exposure = afwImage.makeExposure(mimg)

    # insert an approximate psf
    psf = SingleGaussianPsf(kwid, kwid, meanSigma)
    exposure.setPsf(psf)

    return exposure

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