#include <SimplePhotometryModel.h>

Inheritance diagram for lsst::jointcal::SimpleMagnitudeModel:

Public Member Functions
	SimpleMagnitudeModel (CcdImageList const &ccdImageList, double errorPedestal_=0)

void	offsetFittedStar (FittedStar &fittedStar, double delta) const override
	Offset the appropriate flux or magnitude (by -delta). More...

double	computeResidual (CcdImage const &ccdImage, MeasuredStar const &measuredStar) const override
	Compute the residual between the model applied to a star and its associated fittedStar. More...

double	transform (CcdImage const &ccdImage, MeasuredStar const &measuredStar) const override
	Return the on-sky transformed flux for measuredStar on ccdImage. More...

double	transformError (CcdImage const &ccdImage, MeasuredStar const &measuredStar) const override
	Return the on-sky transformed flux uncertainty for measuredStar on ccdImage. More...

double	getRefError (RefStar const &refStar) const override
	Return the refStar error appropriate for this model (e.g. fluxErr or magErr). More...

double	computeRefResidual (FittedStar const &fittedStar, RefStar const &refStar) const override
	Return the fittedStar - refStar residual appropriate for this model (e.g. flux - flux or mag - mag). More...

std::shared_ptr< afw::image::PhotoCalib >	toPhotoCalib (CcdImage const &ccdImage) const override
	Return the mapping of ccdImage represented as a PhotoCalib. More...

Eigen::Index	assignIndices (std::string const &whatToFit, Eigen::Index firstIndex) override
	Assign indices in the full matrix to the parameters being fit in the mappings, starting at firstIndex. More...

void	offsetParams (Eigen::VectorXd const &delta) override
	Offset the parameters by the provided amounts (by -delta). More...

void	freezeErrorTransform () override
	Once this routine has been called, the error transform is not modified by offsetParams(). More...

void	getMappingIndices (CcdImage const &ccdImage, IndexVector &indices) const override
	Get how this set of parameters (of length Npar()) map into the "grand" fit. More...

std::size_t	getTotalParameters () const override
	Return the total number of parameters in this model. More...

void	computeParameterDerivatives (MeasuredStar const &measuredStar, CcdImage const &ccdImage, Eigen::VectorXd &derivatives) const override
	Compute the parametric derivatives of this model. More...

void	dump (std::ostream &stream=std::cout) const override
	Dump the contents of the transforms, for debugging. More...

std::size_t	getNpar (CcdImage const &ccdImage) const
	Return the number of parameters in the mapping of CcdImage. More...

PhotometryMappingBase const &	getMapping (CcdImage const &ccdImage) const
	Get the mapping associated with ccdImage. More...

bool	validate (CcdImageList const &ccdImageList, int ndof) const
	Return true if this is a "reasonable" model. More...

bool	checkPositiveOnBBox (CcdImage const &ccdImage) const
	Check that the model is positive on the ccdImage bbox. More...

double	getErrorPedestal ()

double	tweakFluxError (jointcal::MeasuredStar const &measuredStar) const
	Add a fraction of the instrumental flux to the instrumental flux error, in quadrature. More...

double	tweakMagnitudeError (jointcal::MeasuredStar const &measuredStar) const
	Add a small magnitude offset to the "instrumental magnitude" error, in quadrature. More...

Protected Types
typedef std::unordered_map< CcdImageKey, std::unique_ptr< PhotometryMapping > >	MapType

Protected Member Functions
PhotometryMappingBase *	findMapping (CcdImage const &ccdImage) const override
	Return the mapping associated with this ccdImage. More...

Protected Attributes
MapType	_myMap

LOG_LOGGER	_log
	lsst.logging instance, to be created by a subclass so that messages have consistent name. More...

double	errorPedestal

Detailed Description

Definition at line 120 of file SimplePhotometryModel.h.

Member Typedef Documentation

◆ MapType

typedef std::unordered_map<CcdImageKey, std::unique_ptr<PhotometryMapping> > lsst::jointcal::SimplePhotometryModel::MapType

protectedinherited

Definition at line 79 of file SimplePhotometryModel.h.

Constructor & Destructor Documentation

◆ SimpleMagnitudeModel()

lsst::jointcal::SimpleMagnitudeModel::SimpleMagnitudeModel	(	CcdImageList const &	ccdImageList,
		double	errorPedestal_ = `0`
	)

Definition at line 131 of file SimplePhotometryModel.cc.

         : SimplePhotometryModel(ccdImageList, LOG_GET("jointcal.SimpleMagnitudeModel"), errorPedestal_) {
     for (auto const &ccdImage : ccdImageList) {
         auto photoCalib = ccdImage->getPhotoCalib();
         // Use the single-frame processing calibration from the PhotoCalib as the default.
         double calib = utils::nanojanskyToABMagnitude(photoCalib->getCalibrationMean());
         auto transform = std::make_shared<MagnitudeTransformSpatiallyInvariant>(calib);
         _myMap.emplace(ccdImage->getHashKey(), std::make_unique<PhotometryMapping>(transform));
     }
     LOGLS_INFO(_log, "SimpleMagnitudeModel got " << _myMap.size() << " ccdImage mappings.");
 }

Member Function Documentation

◆ assignIndices()

Eigen::Index lsst::jointcal::SimplePhotometryModel::assignIndices	(	std::string const &	whatToFit,
		Eigen::Index	firstIndex
	)

overridevirtualinherited

Assign indices in the full matrix to the parameters being fit in the mappings, starting at firstIndex.

Parameters

[in]	whatToFit	String containing parameters to fit.
[in]	firstIndex	Index to start assigning at.

Returns: The highest assigned index.

Implements lsst::jointcal::PhotometryModel.

Definition at line 38 of file SimplePhotometryModel.cc.

                                                                                                  {
     Eigen::Index ipar = firstIndex;
     for (auto const &i : _myMap) {
         auto mapping = i.second.get();
         mapping->setIndex(ipar);
         ipar += mapping->getNpar();
     }
     return ipar;
 }

◆ checkPositiveOnBBox()

bool lsst::jointcal::PhotometryModel::checkPositiveOnBBox ( CcdImage const & ccdImage ) const

inherited

Check that the model is positive on the ccdImage bbox.

Parameters

ccdImage The ccdImage to test.

Returns: True if the image is positive on a sampling of points of the ccdImage bbox.

Definition at line 49 of file PhotometryModel.cc.

                                                                         {
     bool check = true;
     auto bbox = ccdImage.getImageFrame();
     for (auto const &x : {bbox.xMin, bbox.getCenter().x, bbox.xMax})
         for (auto const &y : {bbox.yMin, bbox.getCenter().y, bbox.yMax}) {
             // flux, fluxErr, instFlux, instFluxErr all 1
             jointcal::MeasuredStar star(jointcal::BaseStar(x, y, 1, 1));
             star.setInstFluxAndErr(1, 1);
             double result = transform(ccdImage, star);
             // Don't short circuit so that we log every place the model is negative.
             if (result < 0) {
                 LOGLS_WARN(_log, "CcdImage " << ccdImage.getName() << " is negative at (" << x << "," << y
                                              << "): " << result);
                 check = false;
             }
         }
     return check;
 }

◆ computeParameterDerivatives()

void lsst::jointcal::SimplePhotometryModel::computeParameterDerivatives	(	MeasuredStar const &	measuredStar,
		CcdImage const &	ccdImage,
		Eigen::VectorXd &	derivatives
	)		const

overridevirtualinherited

Compute the parametric derivatives of this model.

Parameters

[in]	measuredStar	The measured star with the position and flux to compute at.
[in]	ccdImage	The ccdImage containing the measured star, to find the correct mapping.
[out]	derivatives	The computed derivatives. Must be pre-allocated to the correct size.

Implements lsst::jointcal::PhotometryModel.

Definition at line 76 of file SimplePhotometryModel.cc.

                                                                                           {
     auto mapping = findMapping(ccdImage);
     mapping->computeParameterDerivatives(measuredStar, measuredStar.getInstFlux(), derivatives);
 }

◆ computeRefResidual()

double lsst::jointcal::SimpleMagnitudeModel::computeRefResidual	(	FittedStar const &	fittedStar,
		RefStar const &	refStar
	)		const

inlineoverridevirtual

Return the fittedStar - refStar residual appropriate for this model (e.g. flux - flux or mag - mag).

Implements lsst::jointcal::PhotometryModel.

Definition at line 142 of file SimplePhotometryModel.h.

                                                                                                    {
         return fittedStar.getMag() - refStar.getMag();
     };

◆ computeResidual()

double lsst::jointcal::SimpleMagnitudeModel::computeResidual	(	CcdImage const &	ccdImage,
		MeasuredStar const &	measuredStar
	)		const

overridevirtual

Compute the residual between the model applied to a star and its associated fittedStar.

\[ residual = Model(measuredStar) - fittedStar \]

Parameters

ccdImage	The ccdImage where measuredStar resides.
measuredStar	The measured star position to compute the residual of.

Returns: The residual.

Implements lsst::jointcal::PhotometryModel.

Definition at line 143 of file SimplePhotometryModel.cc.

                                                                                      {
     return transform(ccdImage, measuredStar) - measuredStar.getFittedStar()->getMag();
 }

◆ dump()

void lsst::jointcal::SimplePhotometryModel::dump ( std::ostream & stream = std::cout ) const

overridevirtualinherited

Dump the contents of the transforms, for debugging.

Implements lsst::jointcal::PhotometryModel.

Definition at line 83 of file SimplePhotometryModel.cc.

                                                          {
     for (auto &i : _myMap) {
         stream << i.first << ": ";
         i.second->dump(stream);
         stream << ", ";
     }
 }

◆ findMapping()

PhotometryMappingBase * lsst::jointcal::SimplePhotometryModel::findMapping ( CcdImage const & ccdImage ) const

overrideprotectedvirtualinherited

Return the mapping associated with this ccdImage.

Implements lsst::jointcal::PhotometryModel.

Definition at line 91 of file SimplePhotometryModel.cc.

                                                                                         {
     auto i = _myMap.find(ccdImage.getHashKey());
     if (i == _myMap.end())
         throw LSST_EXCEPT(pex::exceptions::InvalidParameterError,
                           "SimplePhotometryModel cannot find CcdImage " + ccdImage.getName());
     return i->second.get();
 }

◆ freezeErrorTransform()

void lsst::jointcal::SimplePhotometryModel::freezeErrorTransform ( )

overridevirtualinherited

Once this routine has been called, the error transform is not modified by offsetParams().

The routine can be called when the mappings are roughly in place. After the call, the transformations used to propagate errors are no longer affected when updating the mappings. This allows an exactly linear fit, which can be necessary for some model+data combinations.

Implements lsst::jointcal::PhotometryModel.

Definition at line 55 of file SimplePhotometryModel.cc.

                                                  {
     for (auto &i : _myMap) {
         i.second->freezeErrorTransform();
     }
 }

◆ getErrorPedestal()

double lsst::jointcal::PhotometryModel::getErrorPedestal ( )

inlineinherited

Definition at line 191 of file PhotometryModel.h.

191 { return errorPedestal; }

lsst::jointcal::PhotometryModel::errorPedestal

double errorPedestal

Definition: PhotometryModel.h:219

◆ getMapping()

PhotometryMappingBase const& lsst::jointcal::PhotometryModel::getMapping ( CcdImage const & ccdImage ) const

inlineinherited

Get the mapping associated with ccdImage.

Definition at line 156 of file PhotometryModel.h.

                                                                             {
         return *(findMapping(ccdImage));
     }

◆ getMappingIndices()

void lsst::jointcal::SimplePhotometryModel::getMappingIndices	(	CcdImage const &	ccdImage,
		IndexVector &	indices
	)		const

overridevirtualinherited

Get how this set of parameters (of length Npar()) map into the "grand" fit.

Parameters

[in]	ccdImage	The ccdImage to look up.
[out]	indices	The indices of the mapping associated with ccdImage.

Implements lsst::jointcal::PhotometryModel.

Definition at line 61 of file SimplePhotometryModel.cc.

                                                                                     {
     auto mapping = findMapping(ccdImage);
     if (indices.size() < mapping->getNpar()) indices.resize(mapping->getNpar());
     indices[0] = mapping->getIndex();
 }

◆ getNpar()

std::size_t lsst::jointcal::PhotometryModel::getNpar ( CcdImage const & ccdImage ) const

inlineinherited

Return the number of parameters in the mapping of CcdImage.

Definition at line 153 of file PhotometryModel.h.

153 { return findMapping(ccdImage)->getNpar(); }

lsst::jointcal::PhotometryMappingBase::getNpar

virtual std::size_t getNpar() const =0

Number of total parameters in this mapping.

ccdImage

lsst::jointcal::PhotometryModel::findMapping

virtual PhotometryMappingBase * findMapping(CcdImage const &ccdImage) const =0

Return a pointer to the mapping associated with this ccdImage.

◆ getRefError()

double lsst::jointcal::SimpleMagnitudeModel::getRefError ( RefStar const & refStar ) const

inlineoverridevirtual

Return the refStar error appropriate for this model (e.g. fluxErr or magErr).

Implements lsst::jointcal::PhotometryModel.

Definition at line 139 of file SimplePhotometryModel.h.

139 { return refStar.getMagErr(); }

◆ getTotalParameters()

std::size_t lsst::jointcal::SimplePhotometryModel::getTotalParameters ( ) const

overridevirtualinherited

Return the total number of parameters in this model.

Implements lsst::jointcal::PhotometryModel.

Definition at line 68 of file SimplePhotometryModel.cc.

                                                           {
     std::size_t total = 0;
     for (auto &i : _myMap) {
         total += i.second->getNpar();
     }
     return total;
 }

◆ offsetFittedStar()

void lsst::jointcal::SimpleMagnitudeModel::offsetFittedStar	(	FittedStar &	fittedStar,
		double	delta
	)		const

inlineoverridevirtual

Offset the appropriate flux or magnitude (by -delta).

Parameters

fittedStar	The star to update.
delta	The amount to update by.

Implements lsst::jointcal::PhotometryModel.

Definition at line 125 of file SimplePhotometryModel.h.

                                                                                {
         fittedStar.getMag() -= delta;
     }

◆ offsetParams()

void lsst::jointcal::SimplePhotometryModel::offsetParams ( Eigen::VectorXd const & delta )

overridevirtualinherited

Offset the parameters by the provided amounts (by -delta).

The shifts are applied according to the indices given in assignIndices.

Parameters

[in] delta vector of offsets to apply

Implements lsst::jointcal::PhotometryModel.

Definition at line 48 of file SimplePhotometryModel.cc.

                                                                    {
     for (auto &i : _myMap) {
         auto mapping = i.second.get();
         mapping->offsetParams(delta.segment(mapping->getIndex(), mapping->getNpar()));
     }
 }

◆ toPhotoCalib()

std::shared_ptr< afw::image::PhotoCalib > lsst::jointcal::SimpleMagnitudeModel::toPhotoCalib ( CcdImage const & ccdImage ) const

overridevirtual

Return the mapping of ccdImage represented as a PhotoCalib.

Note: SimplePhotometryModel uses a spatially-invariant transform, so we can simplify the PhotoCalib.

Implements lsst::jointcal::PhotometryModel.

Definition at line 159 of file SimplePhotometryModel.cc.

                                                                                                    {
     // NOTE: photocalib is defined as `instFlux * calibration = flux`,
     // so we have to convert the transform from magnitude space.
     double calibration = utils::ABMagnitudeToNanojansky(findMapping(ccdImage)->getParameters()[0]);
     auto oldPhotoCalib = ccdImage.getPhotoCalib();
     return std::make_unique<afw::image::PhotoCalib>(calibration, oldPhotoCalib->getCalibrationErr());
 }

◆ transform()

double lsst::jointcal::SimpleMagnitudeModel::transform	(	CcdImage const &	ccdImage,
		MeasuredStar const &	measuredStar
	)		const

overridevirtual

Return the on-sky transformed flux for measuredStar on ccdImage.

Parameters

[in]	ccdImage	The ccdImage where measuredStar resides.
	measuredStar	The measured star position to transform.

Returns: The on-sky flux transformed from instFlux at measuredStar's position.

Implements lsst::jointcal::PhotometryModel.

Definition at line 148 of file SimplePhotometryModel.cc.

                                                                                                {
     auto mapping = findMapping(ccdImage);
     return mapping->transform(star, star.getInstMag());
 }

◆ transformError()

double lsst::jointcal::SimpleMagnitudeModel::transformError	(	CcdImage const &	ccdImage,
		MeasuredStar const &	measuredStar
	)		const

overridevirtual

Return the on-sky transformed flux uncertainty for measuredStar on ccdImage.

Identical to transform() until freezeErrorTransform() is called.

Parameters

[in]	ccdImage	The ccdImage where measuredStar resides.
	measuredStar	The measured star position to transform.

Returns: The on-sky flux transformed from instFlux at measuredStar's position.

Implements lsst::jointcal::PhotometryModel.

Definition at line 153 of file SimplePhotometryModel.cc.

                                                                                                     {
     auto mapping = findMapping(ccdImage);
     double tempErr = tweakMagnitudeError(star);
     return mapping->transformError(star, star.getInstMag(), tempErr);
 }

◆ tweakFluxError()

double lsst::jointcal::PhotometryModel::tweakFluxError ( jointcal::MeasuredStar const & measuredStar ) const

inlineinherited

Add a fraction of the instrumental flux to the instrumental flux error, in quadrature.

Definition at line 194 of file PhotometryModel.h.

                                                                           {
         if (errorPedestal == 0) {
             return measuredStar.getInstFluxErr();
         } else {
             return std::hypot(measuredStar.getInstFluxErr(), measuredStar.getInstFlux() * errorPedestal);
         }
     }

◆ tweakMagnitudeError()

double lsst::jointcal::PhotometryModel::tweakMagnitudeError ( jointcal::MeasuredStar const & measuredStar ) const

inlineinherited

Add a small magnitude offset to the "instrumental magnitude" error, in quadrature.

Definition at line 203 of file PhotometryModel.h.

                                                                                {
         if (errorPedestal == 0) {
             return measuredStar.getInstMagErr();
         } else {
             return std::hypot(measuredStar.getInstMagErr(), errorPedestal);
         }
     }

◆ validate()

bool lsst::jointcal::PhotometryModel::validate	(	CcdImageList const &	ccdImageList,
		int	ndof
	)		const

inherited

Return true if this is a "reasonable" model.

A valid photometry model is positive within each sensor's bounding box.

Parameters

ccdImageList	The ccdImages to test the model validity on.
ndof	The number of degrees of freedom in the fit, e.g. from Fitterbase.computeChi2().

Returns: True if the model is valid on all ccdImages.

Definition at line 33 of file PhotometryModel.cc.

                                                                                {
     bool check = true;
     for (auto const &ccdImage : ccdImageList) {
         // Don't short circuit so that we log every place the model is negative.
         check &= checkPositiveOnBBox(*ccdImage);
     }
     if (ndof < 0) {
         check &= false;
         LOGLS_ERROR(_log, "This model only has "
                                   << ndof << " degrees of freedom, with " << getTotalParameters()
                                   << " total parameters. Reduce the model complexity (e.g. polynomial order)"
                                      " to better match the number of measured sources.");
     }
     return check;
 }

Member Data Documentation

◆ _log

LOG_LOGGER lsst::jointcal::PhotometryModel::_log

protectedinherited

lsst.logging instance, to be created by a subclass so that messages have consistent name.

Definition at line 216 of file PhotometryModel.h.

◆ _myMap

MapType lsst::jointcal::SimplePhotometryModel::_myMap

protectedinherited

Definition at line 80 of file SimplePhotometryModel.h.

◆ errorPedestal

double lsst::jointcal::PhotometryModel::errorPedestal

protectedinherited

Definition at line 219 of file PhotometryModel.h.

The documentation for this class was generated from the following files:

/j/snowflake/release/lsstsw/stack/Linux64/jointcal/19.0.0-2-gb96a1c4+3/include/lsst/jointcal/SimplePhotometryModel.h
/j/snowflake/release/lsstsw/stack/Linux64/jointcal/19.0.0-2-gb96a1c4+3/src/SimplePhotometryModel.cc

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

◆ MapType

Constructor & Destructor Documentation

◆ SimpleMagnitudeModel()

Member Function Documentation

◆ assignIndices()

◆ checkPositiveOnBBox()

◆ computeParameterDerivatives()

◆ computeRefResidual()

◆ computeResidual()

◆ dump()

◆ findMapping()

◆ freezeErrorTransform()

◆ getErrorPedestal()

◆ getMapping()

◆ getMappingIndices()

◆ getNpar()

◆ getRefError()

◆ getTotalParameters()

◆ offsetFittedStar()

◆ offsetParams()

◆ toPhotoCalib()

◆ transform()

◆ transformError()

◆ tweakFluxError()

◆ tweakMagnitudeError()

◆ validate()

Member Data Documentation

◆ _log

◆ _myMap

◆ errorPedestal