safeFileIo.py

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#
# LSST Data Management System
#
# Copyright 2008-2015 AURA/LSST.
#
# This product includes software developed by the
# LSST Project (http://www.lsst.org/).
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the LSST License Statement and
# the GNU General Public License along with this program.  If not,
# see <https://www.lsstcorp.org/LegalNotices/>.
#
"""
Utilities for safe file IO
"""
from contextlib import contextmanager
import errno
import fcntl
import filecmp
import os
import tempfile
from lsst.log import Log
 
 
class DoNotWrite(RuntimeError):
    pass
 
 
def safeMakeDir(directory):
    """Make a directory in a manner avoiding race conditions"""
    if directory != "" and not os.path.exists(directory):
        try:
            os.makedirs(directory)
        except OSError as e:
            # Don't fail if directory exists due to race
            if e.errno != errno.EEXIST:
                raise e
 
 
def setFileMode(filename):
    """Set a file mode according to the user's umask"""
    # Get the current umask, which we can only do by setting it and then reverting to the original.
    umask = os.umask(0o077)
    os.umask(umask)
    # chmod the new file to match what it would have been if it hadn't started life as a temporary
    # file (which have more restricted permissions).
    os.chmod(filename, (~umask & 0o666))
 
 
class FileForWriteOnceCompareSameFailure(RuntimeError):
    pass
 
 
@contextmanager
def FileForWriteOnceCompareSame(name):
    """Context manager to get a file that can be written only once and all other writes will succeed only if
    they match the initial write.
 
    The context manager provides a temporary file object. After the user is done, the temporary file becomes
    the permanent file if the file at name does not already exist. If the file at name does exist the
    temporary file is compared to the file at name. If they are the same then this is good and the temp file
    is silently thrown away. If they are not the same then a runtime error is raised.
    """
    outDir, outName = os.path.split(name)
    safeMakeDir(outDir)
    temp = tempfile.NamedTemporaryFile(mode="w", dir=outDir, prefix=outName, delete=False)
    try:
        yield temp
    finally:
        try:
            temp.close()
            # If the symlink cannot be created then it will raise. If it can't be created because a file at
            # 'name' already exists then we'll do a compare-same check.
            os.symlink(temp.name, name)
            # If the symlink was created then this is the process that created the first instance of the
            # file, and we know its contents match. Move the temp file over the symlink.
            os.rename(temp.name, name)
            # At this point, we know the file has just been created. Set permissions according to the
            # current umask.
            setFileMode(name)
        except OSError as e:
            if e.errno != errno.EEXIST:
                raise e
            filesMatch = filecmp.cmp(temp.name, name, shallow=False)
            os.remove(temp.name)
            if filesMatch:
                # if the files match then the compare-same check succeeded and we can silently return.
                return
            else:
                # if the files do not match then the calling code was trying to write a non-matching file over
                # the previous file, maybe it's a race condition? In any event, raise a runtime error.
                raise FileForWriteOnceCompareSameFailure("Written file does not match existing file.")
 
 
@contextmanager
def SafeFile(name):
    """Context manager to create a file in a manner avoiding race conditions
 
    The context manager provides a temporary file object. After the user is done,
    we move that file into the desired place and close the fd to avoid resource
    leakage.
    """
    outDir, outName = os.path.split(name)
    safeMakeDir(outDir)
    doWrite = True
    with tempfile.NamedTemporaryFile(mode="w", dir=outDir, prefix=outName, delete=False) as temp:
        try:
            yield temp
        except DoNotWrite:
            doWrite = False
        finally:
            if doWrite:
                os.rename(temp.name, name)
                setFileMode(name)
 
 
@contextmanager
def SafeFilename(name):
    """Context manager for creating a file in a manner avoiding race conditions
 
    The context manager provides a temporary filename with no open file descriptors
    (as this can cause trouble on some systems). After the user is done, we move the
    file into the desired place.
    """
    outDir, outName = os.path.split(name)
    safeMakeDir(outDir)
    temp = tempfile.NamedTemporaryFile(mode="w", dir=outDir, prefix=outName, delete=False)
    tempName = temp.name
    temp.close()  # We don't use the fd, just want a filename
    try:
        yield tempName
    finally:
        os.rename(tempName, name)
        setFileMode(name)
 
 
@contextmanager
def SafeLockedFileForRead(name):
    """Context manager for reading a file that may be locked with an exclusive lock via
    SafeLockedFileForWrite. This will first acquire a shared lock before returning the file. When the file is
    closed the shared lock will be unlocked.
 
    Parameters
    ----------
    name : string
        The file name to be opened, may include path.
 
    Yields
    ------
    file object
        The file to be read from.
    """
    log = Log.getLogger("daf.persistence.butler")
    try:
        with open(name, 'r') as f:
            log.debug("Acquiring shared lock on {}".format(name))
            fcntl.flock(f, fcntl.LOCK_SH)
            log.debug("Acquired shared lock on {}".format(name))
            yield f
    finally:
        log.debug("Releasing shared lock on {}".format(name))
 
 
class SafeLockedFileForWrite:
    """File-like object that is used to create a file if needed, lock it with an exclusive lock, and contain
    file descriptors to readable and writable versions of the file.
 
    This will only open a file descriptor in 'write' mode if a write operation is performed. If no write
    operation is performed, the existing file (if there is one) will not be overwritten.
 
    Contains __enter__ and __exit__ functions so this can be used by a context manager.
    """
    def __init__(self, name):
        self.log = Log.getLogger("daf.persistence.butler")
        self.name = name
        self._readable = None
        self._writeable = None
        safeMakeDir(os.path.split(name)[0])
 
    def __enter__(self):
        self.open()
        return self
 
    def __exit__(self, type, value, traceback):
        self.close()
 
    def open(self):
        self._fileHandle = open(self.name, 'a')
        self.log.debug("Acquiring exclusive lock on {}".format(self.name))
        fcntl.flock(self._fileHandle, fcntl.LOCK_EX)
        self.log.debug("Acquired exclusive lock on {}".format(self.name))
 
    def close(self):
        self.log.debug("Releasing exclusive lock on {}".format(self.name))
        if self._writeable is not None:
            self._writeable.close()
        if self._readable is not None:
            self._readable.close()
        self._fileHandle.close()
 
    @property
    def readable(self):
        if self._readable is None:
            self._readable = open(self.name, 'r')
        return self._readable
 
    @property
    def writeable(self):
        if self._writeable is None:
            self._writeable = open(self.name, 'w')
        return self._writeable
 
    def read(self, size=None):
        if size is not None:
            return self.readable.read(size)
        return self.readable.read()
 
    def write(self, str):
        self.writeable.write(str)