LSSTApplications
10.0-2-g4f67435,11.0.rc2+1,11.0.rc2+12,11.0.rc2+3,11.0.rc2+4,11.0.rc2+5,11.0.rc2+6,11.0.rc2+7,11.0.rc2+8
LSSTDataManagementBasePackage
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A kernel described by a pair of functions: func(x, y) = colFunc(x) * rowFunc(y) More...
#include <Kernel.h>
Public Types | |
typedef boost::shared_ptr < SeparableKernel > | Ptr |
typedef boost::shared_ptr < SeparableKernel const > | ConstPtr |
typedef lsst::afw::math::Function1 < Pixel > | KernelFunction |
typedef boost::shared_ptr < KernelFunction > | KernelFunctionPtr |
Public Types inherited from lsst.afw.math::Kernel | |
typedef double | Pixel |
typedef boost::shared_ptr< Kernel > | Ptr |
typedef boost::shared_ptr < Kernel const > | ConstPtr |
typedef boost::shared_ptr < lsst::afw::math::Function2 < double > > | SpatialFunctionPtr |
typedef lsst::afw::math::Function2 < double > | SpatialFunction |
typedef lsst::afw::math::NullFunction2 < double > | NullSpatialFunction |
typedef generic_kernel_tag | kernel_fill_factor |
Public Types inherited from lsst::daf::base::Citizen | |
enum | { magicSentinel = 0xdeadbeef } |
typedef unsigned long | memId |
Type of the block's ID. More... | |
typedef memId(* | memNewCallback )(const memId cid) |
A function used to register a callback. More... | |
typedef memId(* | memCallback )(const Citizen *ptr) |
Public Types inherited from lsst::daf::base::Persistable | |
typedef boost::shared_ptr < Persistable > | Ptr |
Public Member Functions | |
SeparableKernel () | |
Construct an empty spatially invariant SeparableKernel of size 0x0. More... | |
SeparableKernel (int width, int height, KernelFunction const &kernelColFunction, KernelFunction const &kernelRowFunction, Kernel::SpatialFunction const &spatialFunction=NullSpatialFunction()) | |
Construct a spatially invariant SeparableKernel, or a spatially varying SeparableKernel that uses the same functional form to model each function parameter. More... | |
SeparableKernel (int width, int height, KernelFunction const &kernelColFunction, KernelFunction const &kernelRowFunction, std::vector< Kernel::SpatialFunctionPtr > const &spatialFunctionList) | |
Construct a spatially varying SeparableKernel. More... | |
virtual | ~SeparableKernel () |
virtual boost::shared_ptr< Kernel > | clone () const |
Return a pointer to a deep copy of this kernel. More... | |
double | computeVectors (std::vector< Pixel > &colList, std::vector< Pixel > &rowList, bool doNormalize, double x=0.0, double y=0.0) const |
Compute the column and row arrays in place, where kernel(col, row) = colList(col) * rowList(row) More... | |
virtual double | getKernelParameter (unsigned int i) const |
virtual std::vector< double > | getKernelParameters () const |
Return the current kernel parameters. More... | |
KernelFunctionPtr | getKernelColFunction () const |
Get a deep copy of the col kernel function. More... | |
KernelFunctionPtr | getKernelRowFunction () const |
Get a deep copy of the row kernel function. More... | |
virtual std::string | toString (std::string const &prefix="") const |
Return a string representation of the kernel. More... | |
virtual void | computeCache (int const cacheSize) |
Compute a cache of Kernel values, if desired. More... | |
virtual int | getCacheSize () const |
Get the current cache size (0 if none) More... | |
Public Member Functions inherited from lsst.afw.math::Kernel | |
Kernel () | |
Construct a null Kernel of size 0,0. More... | |
Kernel (int width, int height, unsigned int nKernelParams, SpatialFunction const &spatialFunction=NullSpatialFunction()) | |
Construct a spatially invariant Kernel or a spatially varying Kernel with one spatial function that is duplicated as needed. More... | |
Kernel (int width, int height, const std::vector< SpatialFunctionPtr > spatialFunctionList) | |
Construct a spatially varying Kernel with a list of spatial functions (one per kernel parameter) More... | |
virtual | ~Kernel () |
double | computeImage (lsst::afw::image::Image< Pixel > &image, bool doNormalize, double x=0.0, double y=0.0) const |
Compute an image (pixellized representation of the kernel) in place. More... | |
geom::Extent2I const | getDimensions () const |
Return the Kernel's dimensions (width, height) More... | |
void | setDimensions (geom::Extent2I dims) |
void | setWidth (int width) |
void | setHeight (int height) |
int | getWidth () const |
Return the Kernel's width. More... | |
int | getHeight () const |
Return the Kernel's height. More... | |
lsst::afw::geom::Point2I | getCtr () const |
Return index of kernel's center. More... | |
int | getCtrX () const |
Return x index of kernel's center. More... | |
int | getCtrY () const |
Return y index of kernel's center. More... | |
lsst::afw::geom::Box2I | getBBox () const |
return parent bounding box, with XY0 = -center More... | |
unsigned int | getNKernelParameters () const |
Return the number of kernel parameters (0 if none) More... | |
int | getNSpatialParameters () const |
Return the number of spatial parameters (0 if not spatially varying) More... | |
SpatialFunctionPtr | getSpatialFunction (unsigned int index) const |
Return a clone of the specified spatial function (one component of the spatial model) More... | |
std::vector< SpatialFunctionPtr > | getSpatialFunctionList () const |
Return a list of clones of the spatial functions. More... | |
lsst::afw::geom::Box2I | growBBox (lsst::afw::geom::Box2I const &bbox) const |
lsst::afw::geom::Box2I | shrinkBBox (lsst::afw::geom::Box2I const &bbox) const |
void | setCtr (lsst::afw::geom::Point2I ctr) |
Set index of kernel's center. More... | |
void | setCtrX (int ctrX) |
Set x index of kernel's center. More... | |
void | setCtrY (int ctrY) |
Set y index of kernel's center. More... | |
std::vector< std::vector < double > > | getSpatialParameters () const |
Return the spatial parameters parameters (an empty vector if not spatially varying) More... | |
bool | isSpatiallyVarying () const |
Return true iff the kernel is spatially varying (has a spatial function) More... | |
void | setKernelParameters (std::vector< double > const ¶ms) |
Set the kernel parameters of a spatially invariant kernel. More... | |
void | setKernelParameters (std::pair< double, double > const ¶ms) |
Set the kernel parameters of a 2-component spatially invariant kernel. More... | |
void | setSpatialParameters (const std::vector< std::vector< double > > params) |
Set the parameters of all spatial functions. More... | |
void | computeKernelParametersFromSpatialModel (std::vector< double > &kernelParams, double x, double y) const |
Compute the kernel parameters at a specified point. More... | |
Public Member Functions inherited from lsst::daf::base::Citizen | |
Citizen (const std::type_info &) | |
Citizen (Citizen const &) | |
~Citizen () | |
Citizen & | operator= (Citizen const &) |
std::string | repr () const |
Return a string representation of a Citizen. More... | |
void | markPersistent (void) |
Mark a Citizen as persistent and not destroyed until process end. More... | |
memId | getId () const |
Return the Citizen's ID. More... | |
Public Member Functions inherited from lsst::daf::base::Persistable | |
Persistable (void) | |
virtual | ~Persistable (void) |
template<class Archive > | |
void | serialize (Archive &, unsigned int const) |
Public Member Functions inherited from lsst.afw.table.io::Persistable | |
void | writeFits (std::string const &fileName, std::string const &mode="w") const |
Write the object to a regular FITS file. More... | |
void | writeFits (fits::MemFileManager &manager, std::string const &mode="w") const |
Write the object to a FITS image in memory. More... | |
void | writeFits (fits::Fits &fitsfile) const |
Write the object to an already-open FITS object. More... | |
virtual bool | isPersistable () const |
Return true if this particular object can be persisted using afw::table::io. More... | |
virtual | ~Persistable () |
Protected Member Functions | |
virtual double | doComputeImage (lsst::afw::image::Image< Pixel > &image, bool doNormalize) const |
Low-level version of computeImage. More... | |
virtual void | setKernelParameter (unsigned int ind, double value) const |
Set one kernel parameter. More... | |
Protected Member Functions inherited from lsst.afw.math::Kernel | |
virtual std::string | getPythonModule () const |
Return the fully-qualified Python module that should be imported to guarantee that its factory is registered. More... | |
void | setKernelParametersFromSpatialModel (double x, double y) const |
Set the kernel parameters from the spatial model (if any). More... | |
Protected Member Functions inherited from lsst.afw.table.io::Persistable | |
virtual std::string | getPersistenceName () const |
Return the unique name used to persist this object and look up its factory. More... | |
virtual void | write (OutputArchiveHandle &handle) const |
Write the object to one or more catalogs. More... | |
Persistable () | |
Persistable (Persistable const &other) | |
void | operator= (Persistable const &other) |
Private Member Functions | |
double | basicComputeVectors (std::vector< Pixel > &colList, std::vector< Pixel > &rowList, bool doNormalize) const |
Compute the column and row arrays in place, where kernel(col, row) = colList(col) * rowList(row) More... | |
template<class Archive > | |
void | serialize (Archive &ar, unsigned int const version) |
virtual void | _setKernelXY () |
Private Attributes | |
KernelFunctionPtr | _kernelColFunctionPtr |
KernelFunctionPtr | _kernelRowFunctionPtr |
std::vector< Pixel > | _localColList |
std::vector< Pixel > | _localRowList |
std::vector< double > | _kernelX |
std::vector< double > | _kernelY |
std::vector< std::vector < double > > | _kernelRowCache |
std::vector< std::vector < double > > | _kernelColCache |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Static Public Member Functions inherited from lsst.afw.table.io::PersistableFacade< SeparableKernel > | |
static boost::shared_ptr < SeparableKernel > | readFits (fits::Fits &fitsfile) |
Read an object from an already open FITS object. More... | |
static boost::shared_ptr < SeparableKernel > | readFits (std::string const &fileName, int hdu=0) |
Read an object from a regular FITS file. More... | |
static boost::shared_ptr < SeparableKernel > | readFits (fits::MemFileManager &manager, int hdu=0) |
Read an object from a FITS file in memory. More... | |
Static Public Member Functions inherited from lsst::daf::base::Citizen | |
static bool | hasBeenCorrupted () |
Check all allocated blocks for corruption. More... | |
static memId | getNextMemId () |
Return the memId of the next object to be allocated. More... | |
static int | init () |
Called once when the memory system is being initialised. More... | |
static int | census (int, memId startingMemId=0) |
How many active Citizens are there? More... | |
static void | census (std::ostream &stream, memId startingMemId=0) |
Print a list of all active Citizens to stream, sorted by ID. More... | |
static const std::vector < const Citizen * > * | census () |
Return a (newly allocated) std::vector of active Citizens sorted by ID. More... | |
static memId | setNewCallbackId (memId id) |
Call the NewCallback when block is allocated. More... | |
static memId | setDeleteCallbackId (memId id) |
Call the current DeleteCallback when block is deleted. More... | |
static memNewCallback | setNewCallback (memNewCallback func) |
Set the NewCallback function. More... | |
static memCallback | setDeleteCallback (memCallback func) |
Set the DeleteCallback function. More... | |
static memCallback | setCorruptionCallback (memCallback func) |
Set the CorruptionCallback function. More... | |
Static Public Member Functions inherited from lsst.afw.table.io::PersistableFacade< Kernel > | |
static boost::shared_ptr< Kernel > | readFits (fits::Fits &fitsfile) |
Read an object from an already open FITS object. More... | |
static boost::shared_ptr< Kernel > | readFits (std::string const &fileName, int hdu=0) |
Read an object from a regular FITS file. More... | |
static boost::shared_ptr< Kernel > | readFits (fits::MemFileManager &manager, int hdu=0) |
Read an object from a FITS file in memory. More... | |
Protected Types inherited from lsst.afw.table.io::Persistable | |
typedef io::OutputArchiveHandle | OutputArchiveHandle |
Protected Attributes inherited from lsst.afw.math::Kernel | |
std::vector< SpatialFunctionPtr > | _spatialFunctionList |
A kernel described by a pair of functions: func(x, y) = colFunc(x) * rowFunc(y)
The function's x, y arguments are as follows:
Note: each pixel is set to the value of the kernel function at the center of the pixel (rather than averaging the function over the area of the pixel).
typedef boost::shared_ptr< SeparableKernel const> lsst.afw.math::SeparableKernel::ConstPtr |
typedef boost::shared_ptr< KernelFunction > lsst.afw.math::SeparableKernel::KernelFunctionPtr |
typedef boost::shared_ptr< SeparableKernel > lsst.afw.math::SeparableKernel::Ptr |
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explicit |
Construct an empty spatially invariant SeparableKernel of size 0x0.
Definition at line 35 of file SeparableKernel.cc.
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explicit |
Construct a spatially invariant SeparableKernel, or a spatially varying SeparableKernel that uses the same functional form to model each function parameter.
width | width of kernel |
height | height of kernel |
kernelColFunction | kernel column function |
kernelRowFunction | kernel row function |
spatialFunction | spatial function; one deep copy is made for each kernel column and row function parameter; if omitted or set to Kernel::NullSpatialFunction then the kernel is spatially invariant |
Definition at line 47 of file SeparableKernel.cc.
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explicit |
Construct a spatially varying SeparableKernel.
lsst::pex::exceptions::InvalidParameterError | if the length of spatialFunctionList != # kernel function parameters. |
width | width of kernel |
height | height of kernel |
kernelColFunction | kernel column function |
kernelRowFunction | kernel row function |
spatialFunctionList | list of spatial funcs, one per kernel column and row function parameter; a deep copy is made of each function |
Definition at line 65 of file SeparableKernel.cc.
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Reimplemented from lsst.afw.math::Kernel.
Definition at line 1138 of file Kernel.h.
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private |
Compute the column and row arrays in place, where kernel(col, row) = colList(col) * rowList(row)
Warning: the length of colList and rowList are not verified!
lsst::pex::exceptions::OverflowError | if doNormalize is true and the kernel sum is exactly 0 |
colList | column vector |
rowList | row vector |
doNormalize | normalize the arrays (so sum of each is 1)? |
Definition at line 190 of file SeparableKernel.cc.
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Return a pointer to a deep copy of this kernel.
This kernel exists instead of a copy constructor so one can obtain a copy of an actual kernel instead of a useless copy of the base class.
Every kernel subclass must override this method.
Implements lsst.afw.math::Kernel.
Reimplemented in lsst.afw.math::NearestWarpingKernel, lsst.afw.math::BilinearWarpingKernel, and lsst.afw.math::LanczosWarpingKernel.
Definition at line 91 of file SeparableKernel.cc.
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Compute a cache of Kernel values, if desired.
const | cache size (number of double precision array elements in the x and y caches) |
Reimplemented from lsst.afw.math::Kernel.
Definition at line 308 of file SeparableKernel.cc.
double lsst.afw.math::SeparableKernel::computeVectors | ( | std::vector< Pixel > & | colList, |
std::vector< Pixel > & | rowList, | ||
bool | doNormalize, | ||
double | x = 0.0 , |
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double | y = 0.0 |
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Compute the column and row arrays in place, where kernel(col, row) = colList(col) * rowList(row)
x, y are ignored if there is no spatial function.
lsst::pex::exceptions::InvalidParameterError | if colList or rowList is the wrong size |
lsst::pex::exceptions::OverflowError | if doNormalize is true and the kernel sum is exactly 0 |
colList | column vector |
rowList | row vector |
doNormalize | normalize the image (so sum of each is 1)? |
x | x (column position) at which to compute spatial function |
y | y (row position) at which to compute spatial function |
Definition at line 105 of file SeparableKernel.cc.
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protectedvirtual |
Low-level version of computeImage.
Before this is called the image dimensions are checked, the image's xy0 is set and the kernel's parameters are set. This routine sets the pixels, including normalization if requested.
Implements lsst.afw.math::Kernel.
Definition at line 160 of file SeparableKernel.cc.
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Get the current cache size (0 if none)
Reimplemented from lsst.afw.math::Kernel.
Definition at line 320 of file SeparableKernel.cc.
afwMath::SeparableKernel::KernelFunctionPtr lsst.afw.math::SeparableKernel::getKernelColFunction | ( | ) | const |
Get a deep copy of the col kernel function.
Definition at line 128 of file SeparableKernel.cc.
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Return a particular Kernel Parameter (no bounds checking). This version is slow, but specialisations may be faster
Reimplemented from lsst.afw.math::Kernel.
Definition at line 1049 of file Kernel.h.
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Return the current kernel parameters.
If the kernel is spatially varying then the parameters are those last computed. See also computeKernelParametersFromSpatialModel. If there are no kernel parameters then returns an empty vector.
Reimplemented from lsst.afw.math::Kernel.
Definition at line 149 of file SeparableKernel.cc.
afwMath::SeparableKernel::KernelFunctionPtr lsst.afw.math::SeparableKernel::getKernelRowFunction | ( | ) | const |
Get a deep copy of the row kernel function.
Definition at line 133 of file SeparableKernel.cc.
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Definition at line 1127 of file Kernel.h.
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Set one kernel parameter.
Classes that have kernel parameters must subclass this function.
This function is marked "const", despite modifying unimportant internals, so that computeImage can be const.
lsst::pex::exceptions::InvalidParameterError | always (unless subclassed) |
Reimplemented from lsst.afw.math::Kernel.
Reimplemented in lsst.afw.math::NearestWarpingKernel, lsst.afw.math::BilinearWarpingKernel, and lsst.afw.math::LanczosWarpingKernel.
Definition at line 177 of file SeparableKernel.cc.
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Return a string representation of the kernel.
Reimplemented from lsst.afw.math::Kernel.
Definition at line 138 of file SeparableKernel.cc.
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